Supplementary Tables S1-S6 from Ultra High-plex Spatial Proteogenomic Investigation of Giant Cell Glioblastoma Multiforme Immune Infiltrates Reveals Distinct Protein and RNA Expression Profiles

Bonnett, Shilah A.; Rosenbloom, Alyssa B.; Ong, Giang T.; Conner, Mark; Rininger, Aric B.E.; Newhouse, Daniel; New, Felicia; Phan, Chi Q.; Ilcisin, Saskia; Sato, Hiromi; Lyssand, John S.; Geiss, Gary; Beechem, Joseph M.

doi:10.1158/2767-9764.22744276.v1

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Supplementary Tables S1-S6 from Ultra High-plex Spatial Proteogenomic Investigation of Giant Cell Glioblastoma Multiforme Immune Infiltrates Reveals Distinct Protein and RNA Expression Profiles

journal contribution

posted on 2023-05-03, 14:20 authored by Shilah A. Bonnett, Alyssa B. Rosenbloom, Giang T. Ong, Mark Conner, Aric B.E. Rininger, Daniel Newhouse, Felicia New, Chi Q. Phan, Saskia Ilcisin, Hiromi Sato, John S. Lyssand, Gary Geiss, Joseph M. Beechem

Supplementary Table S1: A list of materials and reagents that are recommended for the GeoMx DSP assays that are not supplied by NanoString. Supplementary Table S2. A list of NanoString supplied materials and reagents. Supplementary Table S3: A list of Human protein targets by module. Supplementary Table S4: A list of Mouse protein targets by module. Supplementary Table S5: The 11-cell pellet array (CPA) used in assay development. Supplementary Table S6: The 45-cell pellet array (CPA) used in assay development.

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ARTICLE ABSTRACT

We describe ultra high-plex spatial proteogenomics; profiling whole transcriptome and high-plex proteomics on a single FFPE tissue section with spatial resolution. Investigation of gcGBM versus GBM revealed distinct protein and RNA expression profiles.