Supplementary Figures 1-16 and Legends from T-cell Responses in the Microenvironment of Primary Renal Cell Carcinoma—Implications for Adoptive Cell Therapy
S1.(A) The figure shows an image of cancer cells stained with May-Grünwald-Giemsa (MGG) after cytospin centrifugation of freshly detached cancer cells from a representative patient (RCC12), magnification x 200. The red arrow shows a mitotic figure. (B) The figure shows images of clotted cancer cells from RCC12 after formalin-fixation and paraffin-embedding followed by immunohistochemistry (IHC) staining for various RCC markers (as seen from the figure). S2. The FACS plots demonstrate CD107a mobilization (left panels) and cytokine production (TNF and IFNgamma right panels) from PBMCs alone (control) and after co-culture with autologous tumor cell line (TCL) in a representative RCC patient (RCC28). Plots are gated on CD3+ cells (left panels) and CD3+ CD8+ cells (right panels). S3. Changes in TIL reactivity during the rapid expansion protocol (REP). S4. The FACS plots demonstrate cytokine production (TNF and IFNgamma) after co-culture assay with autologous tumor cell lines from (A) unselected MM REP-TILs (gated on CD8+ T cells) and (B) CD8+CD107a+ sorted MM REP-TILs in a representative patient. S5. Massive expansion with alternative cytokine combinations S6. Cytolytic activity of RCC-TIL S7. Polyfunctional characterization of CD8+CD107a+ tumor-reactive T cells. S8. Differentiation/dysfunctional profile of CD8+ tumor-reactive Y-TIL S9. Differentiation/dysfunctional profile of CD8+ REP-TIL Up-regulation of HLA class I expression after exposure to IFNgamma S10. Up-regulation of HLA class I expression after exposure to IFNgamma.� S11. Constitutive expression of the major antigen processing machinery (APM) components in RCC and MM by qPCR. S12. IFNgamma-induced upregulation of the major antigen processing machinery (APM) components in RCC and MM by qPCR. S13. IFNgamma-induced fold induction of the major antigen processing machinery (APM) components in RCC and MM by qPCR. S14. Effects of IFNgamma on autologous tumor recognition by CD8+ T cells. S15. Up-regulation of HLA class II after exposure to IFNgamma in RCC and MM S16. Effects of IFNgamma on autologous tumor recognition by CD4+ T cells.