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Supplementary Figure S4 from Genomic Profiling and Immune Phenotyping of Neuroendocrine Bladder Cancer

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posted on 2024-11-01, 07:23 authored by Jingyu Zang, Akezhouli Shahatiaili, Mei-Chun Cai, Di Jin, Peiye Shen, Lei Qian, Lu Zhang, Tianxiang Zhang, Yuchen Wu, Fan Yang, Zheng Wu, Yanli Hou, Yongrui Bai, Jun Xia, Liang Cheng, Ruiyun Zhang, Guanglei Zhuang, Haige Chen
<p>Kataegis events in NEBC.</p>

Funding

National Natural Science Foundation of China (NSFC)

Natural Science Foundation of Shanghai Municipality (上海市自然科学基金)

Shanghai Municipal Health Commission (上海市卫生健康委员会)

Shanghai Municipal Education Commission (上海市教育委员会)

Innovative Research Team of High-level Local University in Shanghai

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ARTICLE ABSTRACT

Neuroendocrine bladder cancer (NEBC) poses a formidable clinical challenge and attracts keen interests to explore immunotherapy as a viable treatment option. However, a comprehensive immunogenomic landscape has yet to be thoroughly investigated. Leveraging a long-term cohort of natural NEBC cases, we employed a multimodal approach integrating genomic (n = 19), transcriptomic (n = 3), single-cell RNA sequencing (n = 1), and IHC analyses (n = 34) to meticulously characterize the immunogenicity and immunotypes of primary NEBC tumors. Information on clinical, pathologic, medical imaging, and treatment aspects was retrospectively retrieved and analyzed. Our study unveiled that despite a considerable mutational burden, NEBC was typically immunologically inactive, as manifested by the “immune-excluded” or “immune-desert” microenvironment. Interestingly, a subset of mixed NEBC with concurrent urothelial bladder cancer histology displayed an “immune-infiltrated” phenotype with prognostic relevance. When compared with urothelial bladder cancer, NEBC lesions were distinguished by a denser cellular composition and augmented peritumoral extracellular matrix, which might collectively impede lymphatic infiltration. As a result, single-agent immune checkpoint inhibitors demonstrated limited efficacy against NEBC, whereas pharmacologic immunostimulation with combination chemotherapy conferred a more favorable response. These new insights derived from genomic profiling and immune phenotyping pave the way for rational immunotherapeutic interventions in patients with NEBC, with the potential to ultimately reduce mortality from this otherwise fatal disease.

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