journal contribution
posted on 2023-04-03, 08:22 authored by Meghan E. Muse, Connolly D. Carroll, Lucas A. Salas, Margaret R. Karagas, Brock C. Christensen Correlation between estimated relative proportions of immune cells and true relative proportions in the in silico mixtures (n=12). Component cell types include B cells, CD4+ T cells, CD8+ T cells, monocytes, neutrophils, and NK cells.
Funding
National Institute of General Medical Sciences (NIGMS)
United States Department of Health and Human Services
Find out more...National Cancer Institute (NCI)
United States Department of Health and Human Services
Find out more...National Institute of Environmental Health Sciences (NIEHS)
United States Department of Health and Human Services
Find out more...U.S. Environmental Protection Agency (EPA)
U.S. Department of Defense (DOD)
NIH Office of the Director (OD)
History
ARTICLE ABSTRACT
DNA methylation patterning is cell-type–specific and altered DNA methylation is well established to occur early in breast carcinogenesis, affecting non-cancerous, histopathologically normal breast tissue. Previous work assessing risk factor–associated alterations to DNA methylation in breast tissue has been limited, with even less published research in breast milk, a noninvasively obtained biospecimen containing sloughed mammary epithelial cells that may identify early alterations indicative of cancer risk.
Here, we present a novel library for the estimation of the cellular composition of breast tissue and milk and subsequent assessment of cell-type–independent alterations to DNA methylation associated with established breast cancer–risk factors in solid breast tissue (n = 95) and breast milk (n = 48) samples using genome-scale DNA methylation measures from the Illumina HumanMethylation450 array.
We identified 772 hypermethylated CpGs (P < 0.01) associated with age consistent between breast tissue and breast milk samples. Age-associated hypermethylated CpG loci were significantly enriched for CpG island shore regions known to be important for regulating gene expression. Among the overlapping hypermethylated loci mapping to genes, a differentially methylated region was identified in the promoter region of SFRP2, a gene observed to undergo promoter hypermethylation in breast cancer.
Our findings suggest the potential to identify epigenetic biomarkers of breast cancer risk in noninvasively obtained, tissue-specific breast milk specimens.
This work demonstrates the potential of using breast milk as a noninvasive biomarker of breast cancer risk, improving our ability to detect early-stage disease and lowering the overall disease burden.
